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ba()
- Functions from gamlss/gamlss.add with bugs fixed
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construct_data()
- Construct the input data (covariate matrix and expression matrix)
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example_sce
- A SingleCellExperiment object containing both cell type and pseudotime
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extract_para()
- Extract the parameters of each cell's distribution
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fit_copula()
- Fit the copula model
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fit_marginal()
- Fit the marginal models
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ga()
- Functions from gamlss/gamlss.add with bugs fixed
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gamlss.ba()
- Support for Function ba()
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gamlss.ga()
- Support for Function ga()
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perform_lrt()
- Perform the likelihood ratio test
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plot_reduceddim()
- Dimensionality reduction and visualization
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scdesign3()
- The wrapper for the whole scDesign3 pipeline
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simu_new()
- Simulate new data
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sparse_cov()
- This function computes the thresholding sparse covariance/correlation estimator
with the optimal threshold level.