Package index • ClusterDE

All functions

calcNullPval(): Calculate pval for each gene in synthetic null data
callDE(): Call differentially expressed (DE) genes by Clipper algorithm
constructNull(): Construct the synthetic null data
dimPlot(): Plot reduced-dimensional embeddings for reference and null data
exampleCounts: A count matrix of 100 genes from the A549 cell line from Tian et al., Nature Methods, 2019.
findMarkers(): Find differential markers using ClusterDE
logcp10k(): Log-transformed Counts per 10,000 (logCP10K)