Function reference • ClusterDE

All functions

callDE(): Call differentially expressed (DE) genes by Clipper algorithm

checkNullData(): Check Whether Simulated Null Data Outperform ClusterDE's Default Null Data

constructNull(): Construct the synthetic null data

dimPlot(): Plot reduced-dimensional embeddings for reference and null data

exampleCounts: A count matrix of 100 genes from the A549 cell line from Tian et al., Nature Methods, 2019.

logcp10k(): Log-transformed Counts per 10,000 (logCP10K)